I did this, about a week ago. I can post a photo if you like, but it would be hard to get back in there to shoot it because my boat is rather small and things are cramped in there. But, basically what I did was to plumb in a bypass across the inlet and outlet of the water heater. I used two ball valves to do it.
The first ball valve, which is just after the hot and cold water pipes split coming out of the fresh water pump, is essentially a Y valve, although it is a right angle valve. It directs pressurized fresh water either through the water heater or through the bypass bridge. The second valve just closes off the output of the water heater, so that water coming through the bypass doesn't flow backwards into the water heater through its' outlet.
I haven't winterized using this system yet, but what I plan to do is to empty the water tank completely, then drain the heater completely using its' built-in drain (it should do this with the faucets cracked so that it doesn't airlock, at least that's the plan) and then set the valves so that I can put pink stuff in the water tank and pump it through the whole system. The heater should stay empty if I've done this right. We'll see.
You could do the same thing with three on-off valves, it seems to me. One in the bridge itself, one to close off the heater output for the reasons above, and one in the heater inlet line to make sure that the water flow went through the bridge. You'd need two tees as well, as the bridge would be tee'd across the inlet and outlet lines.
Good luck on this. I will be winterizing all too soon, so I'll let everyone know..